capturing sambamba/markdup log for MultiQC report

maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

http://snakepipes.readthedocs.io

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Open caballero opened 2 months ago

caballero commented 2 months ago

Sambamba markdup log is needed for MultiQC report, this changes captures that and renamed the flagstat outptus