maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data
http://snakepipes.readthedocs.io
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force compression of multiqc_data #1079

Open thomasmanke opened 3 weeks ago

thomasmanke commented 3 weeks ago

Can we multiqc --zip-data-dir? https://github.com/maxplanck-ie/snakepipes/blob/7df9bd36ae5fff9f47f5c6e3974f4147146f9656/snakePipes/shared/rules/multiQC.snakefile#L148

This would only be a small gain in storage, but it would deal with group permission issue encountered in BRB. See: https://github.com/maxplanck-ie/BigRedButton/issues/100#issuecomment-2465967725

Not sure if anyone needs multiqc_data uncompressed, but we could make this also optional, and use this option with BRB.