Closed adeslatt closed 4 years ago
Please try creating that failed environment again in ~20 minutes. I've pushed out a new build of r-histonehmm on OSX over on bioconda, so it should work now. Thanks for pointing out the issue with 1.7-1
as a version, it should be 1.7.1
actually, though apparently conda knows what we meant since it's able to solve the environment on Linux.
We're now testing that this works with every commit, so I hope you never run into such problems again :)
Hello.
On a mac OS 10. I am stymied by the createIndices step
Error I get:
All previous steps in install were successful -- with a minor difference in that on a mac you need to activate environments a little differently -- it could be in the end my mac is too underpowered to run this and I will need to run this on a cluster -- but am trying to see if there are somethings that might be accomplished on the mac as well....
Here are my steps:
installed miniconda3 in ~/Desktop/conda3
Created a python3 environment with
Then I was able to install snakePipes - the “-n” names the environment — the ‘-c’ uses channels
On the mac — to activate an environment you need to source that environment
This failed for me. Giving me the error about not finding r-histonehmm pkg:
This is how that was fixed: conda install -c bioconda -c conda-forge r-histonehmm
I had to edit the yaml file for the required package because it actually specified a version – this is a bit of a hack – and should be fixed properly – I’ll message the author and let him know. I use emacs – but the file was this one:
Its contents had been:
I changed it to:
This should have allowed me to run the createIndices command but it fails. Any hints or help would be appreciated! Thanks!