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maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data
http://snakepipes.readthedocs.io
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cutntag peak calling #808

Closed LeilyR closed 4 weeks ago

LeilyR commented 2 years ago

bamtobed and peak calling on bed files

katsikora commented 2 years ago

Hi Leily, is this a feature you are working on?

Best,

Katarzyna

LeilyR commented 2 years ago

no, I am not. I meant to but I never had time for that. Go ahead if you want to take care of it. Althought keep in mind that macs3 might have already taken care of paired end data in a better way, so it might be unnecessary.

katsikora commented 2 years ago

I'll just tag it as enhancement then, for the time being. Thanks!