filter bam rule in umi_tools.snakefile doesn't include bwa

maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

http://snakepipes.readthedocs.io

383 stars 85 forks source link

Closed jeffhsu3 closed 1 month ago

jeffhsu3 commented 1 year ago

bwa aligned bams aren't properly filtered because of this and just sym-linked

katsikora commented 1 month ago

This is now fixed in the develop branch.