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maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data
http://snakepipes.readthedocs.io
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CI dag test #901

Closed WardDeb closed 3 weeks ago

WardDeb commented 1 year ago

Using -q / --quiet on top of a dryrun would make parsing the proposed number of rules more straight forward and easier to replicate with changing versions of snakemake. (which would be a preferred metric over a linecount if I understand correctly)

katsikora commented 1 year ago

It would be good to test this in parallel to the line count, and deprecate over time, I think. Also, perhaps snakemake's unit tests could be useful, and some sort of checks on the wildcards.