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maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data
http://snakepipes.readthedocs.io
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WorkflowError in line 187 #919

Closed sunta3iouxos closed 1 year ago

sunta3iouxos commented 1 year ago

Finished job 0. 29 of 29 steps (100%) done Complete log: .snakemake/log/2023-08-16T172747.055033.snakemake.log

---- This analysis has been done using snakePipes version 2.7.3 ---

WorkflowError in line 187 of mambaforge/envs/snakePipes/lib/python3.11/site-packages/snakePipes/workflows/DNA-mapping/Snakefile: Resource _nodes is of type int but global resource constraint defines <class 'str'> with value 6. Resources with the same name need to have the same types (int, float, or str are allowed).

This error was generated after the successful DNA-mapping

katsikora commented 1 year ago

Hi Sunta3iouxos,

did you run the DNA-mapping workflow with --DAG and --local ? I've seen this happening before with this combination of flags. It will possibly go away once we update the snakemake version we are building snakePipes with.

Best wishes,

Katarzyna

sunta3iouxos commented 1 year ago

Yes, I am running the pipeline locally (--local) and wanted to also create a diagram of processes (--DAG). So, it will be solved. Thank you