Closed sunta3iouxos closed 9 months ago
Hi,
it looks like the command that is reading the file you provided the url (or path) for host genome fasta is erroring out. Can you try by providing the absolute path to that fasta file, rather than a relative path?
Best wishes,
Katarzyna
sorry for the delayed answer, I was on vacation. Will try your suggestion as soon as possible
Closing for now, feel free to reopen if needed.
The command I used is:
I have already run successfully a DNA-mapping and ChIP-seq pipeline and wanted to create new indexed reference genome to include spike ins and "proper" exclusion chromosomes for normalisation type of analysis (also relevant #930 )
the command fails with the following error:
this is the error in 19_spikesCUTnRUN/cluster_logs/createHostGenomeFasta.18124033.err
and this is the error in 19_spikesCUTnRUN/cluster_logs/createHostGenomeFasta.18124070.err