make splitSampleSheet more flexible and include any column between name and condition

maxplanck-ie / snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

http://snakepipes.readthedocs.io

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make splitSampleSheet more flexible and include any column between name and condition #955

Open katsikora opened 11 months ago

katsikora commented 11 months ago

Currently, splitSampleSheet looks for a "batch" column, in addition to name and condition. Make it flexible, so that any column between name and condition might be included - so that it can be used as blocking factor in downstream DESeq2 analysis.