The first MEM alignment is reported as primary and all the following MEMs are reported as secondary.
Each MEM have a CIGAR where the extremes of the match are soft clipped (S) and the MEM is reported as M.
The runtime might be affected by the output formatting.
Implements #10
-s) tomoni memsThe first MEM alignment is reported as primary and all the following MEMs are reported as secondary. Each MEM have a CIGAR where the extremes of the match are soft clipped (
S) and the MEM is reported asM. The runtime might be affected by the output formatting.