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maxrossi91 / moni

MONI: A Pangenomic Index for Finding MEMs
MIT License
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Emit valid SAM format outputs #9

Closed AndreaGuarracino closed 2 months ago

AndreaGuarracino commented 2 months ago

The current SAM format output does not work properly with tools like samtools. Checking it with the quickcheck command, I get:

samtools quickcheck reads.sam
reads.sam was not identified as sequence data.

The problems were a few non-TAB-separated rows.

maxrossi91 commented 2 months ago

Thanks for the fix.