Incorrect pedigree plot

[magnusdv]

Hi, I wonder if the latest CRAN version of kinship2 introduced a bug affecting alignment in some cases. Below is an example shown both versions.

Any idea what's going on? A fix would be much appreciated! Thanks for your good work. -M

Version 1.8.5 (correct)

library(kinship2, quietly = T)
packageVersion("kinship2")
#> [1] '1.8.5'

x = pedigree(id = 1:7, dad = c(0,0,0,1,3,0,3), mom = c(0,0,0,2,4,0,6), sex = c(1,2,1,2,1,2,1))
plot(x)

Version 1.9.6 (wrong)

library(kinship2, quietly = T)
packageVersion("kinship2")
#> [1] '1.9.6'

x = pedigree(id = 1:7, dad = c(0,0,0,1,3,0,3), mom = c(0,0,0,2,4,0,6), sex = c(1,2,1,2,1,2,1))
plot(x)

#> Did not plot the following people: 7

^{Created on 2022-12-29 with reprex v2.0.2}

[sinnweja]

Thanks for letting me know. I'll look at it this weekend.

-Jason

From: Magnus Dehli Vigeland @.> Sent: Thursday, December 29, 2022 5:05 PM To: mayoverse/kinship2 @.> Cc: Subscribed @.***> Subject: [EXTERNAL] [mayoverse/kinship2] Incorrect pedigree plot (Issue #13)

Hi, I wonder if the latest CRAN version of kinship2 introduced a bug affecting alignment in some cases. Below is an example shown both versions.

Any idea what's going on? A fix would be much appreciated! Thanks for your good work. -M

Version 1.8.5 (correct)

library(kinship2, quietly = T)

packageVersion("kinship2")

> [1] '1.8.5'

x = pedigree(id = 1:7, dad = c(0,0,0,1,3,0,3), mom = c(0,0,0,2,4,0,6), sex = c(1,2,1,2,1,2,1))

plot(x)

[https://camo.githubusercontent.com/b2fedc6cabaa72939b95e9aa267402d7f9a465b3314efb926d0cd9da1a089fb5/68747470733a2f2f692e696d6775722e636f6d2f4466774b66776e2e706e67]https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcamo.githubusercontent.com%2Fb2fedc6cabaa72939b95e9aa267402d7f9a465b3314efb926d0cd9da1a089fb5%2F68747470733a2f2f692e696d6775722e636f6d2f4466774b66776e2e706e67&data=05%7C01%7CSinnwell.Jason%40mayo.edu%7Cba3be0515e9b4511de5908dae9f12450%7Ca25fff9c3f634fb29a8ad9bdd0321f9a%7C0%7C0%7C638079519153285111%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=dh47wlyzRg%2BmFeg8MX%2BbA2OLk0YvjkZxDB3AlBraja8%3D&reserved=0

Version 1.9.6 (wrong)

library(kinship2, quietly = T)

packageVersion("kinship2")

> [1] '1.9.6'

x = pedigree(id = 1:7, dad = c(0,0,0,1,3,0,3), mom = c(0,0,0,2,4,0,6), sex = c(1,2,1,2,1,2,1))

plot(x)

[https://camo.githubusercontent.com/2f9d843bc789e4857d383ce4253807d8d0529e775f7bee5b380954dce8007af8/68747470733a2f2f692e696d6775722e636f6d2f393374583453632e706e67]https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcamo.githubusercontent.com%2F2f9d843bc789e4857d383ce4253807d8d0529e775f7bee5b380954dce8007af8%2F68747470733a2f2f692e696d6775722e636f6d2f393374583453632e706e67&data=05%7C01%7CSinnwell.Jason%40mayo.edu%7Cba3be0515e9b4511de5908dae9f12450%7Ca25fff9c3f634fb29a8ad9bdd0321f9a%7C0%7C0%7C638079519153285111%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=w1fLIz%2FAjAwXqVak81eShVFwdruWFKI6SdUoB%2BbZHDw%3D&reserved=0

> Did not plot the following people: 7

Created on 2022-12-29 with reprex v2.0.2https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Freprex.tidyverse.org%2F&data=05%7C01%7CSinnwell.Jason%40mayo.edu%7Cba3be0515e9b4511de5908dae9f12450%7Ca25fff9c3f634fb29a8ad9bdd0321f9a%7C0%7C0%7C638079519153285111%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=rirIPXPYOcTtIX1MSafR6Yvau1OdRzPkocJid54sfNI%3D&reserved=0

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[alexkrohn]

I too am having problems plotting a certain pedigree where one individual is plotted as floating without offspring even though the pedigree information says they have offspring. It doesn't seem to resolve itself by resorting back to an earlier version of kinship. Here's the input dataset.