[API] error in import nodes and edges attributes

File formats guide

Command used:

ImportAttributes.import_node_attributes(sg,"node_attributes.tsv", sep="\t")

Error received:

Reading attributes from file node_attributes.tsv and adding them to nodes
WARNING: Attributes will be added as strings, so remember to convert them to proper types

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-51-c95ca8792c96> in <module>()
----> 1 ImportAttributes.import_node_attributes(sg,"node_attributes.tsv", sep="\t")

/home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pyntacle/io_stream/import_attributes.py in import_node_attributes(graph, file, sep)
    160 
    161         #check if file name is properly passed
--> 162         check = check_file(graph=graph, file=file, sep=sep)
    163         infile = check[0]
    164         if sep is None:

/home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/pyntacle/io_stream/import_attributes.py in check_file(graph, file, sep)
     49         first = head.split(sep)[0]
     50 
---> 51         if first in graph.vs("name"):
     52             sys.stdout.write("ERROR: header is not specified\n")
     53             raise ValueError("header is not specified")

/home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/igraph/__init__.py in __call__(self, *args, **kwds)
   4139         This method simply passes all its arguments to L{VertexSeq.select()}.
   4140         """
-> 4141         return self.select(*args, **kwds)
   4142 
   4143 ##############################################################

/home/lorenzo/miniconda3/envs/new_pynt_env/lib/python3.7/site-packages/igraph/__init__.py in select(self, *args, **kwds)
   4103 
   4104         @return: the new, filtered vertex sequence"""
-> 4105         vs = _igraph.VertexSeq.select(self, *args)
   4106 
   4107         operators = {

TypeError: bad argument type for built-in operation

Same error received with the following command:

ImportAttributes.import_edge_attributes(sg, "edge_attributes_standard.tsv", sep="\t", mode="standard")

mazzalab / pyntacle

[API] error in import nodes and edges attributes #55