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mbari-org / vars-annotation

Video Annotation Application for MBARI's Media Management (M3) software stack
https://docs.mbari.org/vars-annotation/
Apache License 2.0
16 stars 6 forks source link

Concept name of record reverts to previous name during editing #129

Closed SarahRDBingo closed 1 year ago

SarahRDBingo commented 2 years ago

when creating a new record or copying a previous record and changing the concept name to a new taxa, the taxon will update to the new name, but then revert back to the previous name or "object" after adding in details such as "upon" and "photo-reference." The concept name change happens when adding some detail associations, but not always. The name is more likely to change when details are edited in the associations pane. After associations are added and edited, the undesired concept name change can be undone by using the back button or cmd+z function.

SarahRDBingo commented 2 years ago

I'm hoping this is a derby issue that will be fixed if we transfer over to a PostgreSQL database

hohonuuli commented 2 years ago

@SarahRDBingo That's something we aren't experiencing at MBARI, so yes, it's likely related to Derby's performance. I worked on the Postgres port a few weeks ago. It still needs some more testing and then a couple of bits or code to transfer your data from derby into Postgres.

hohonuuli commented 2 years ago

@SarahRDBingo I think I've got the M3/VARS stack running against postgres now. As time permits, I'll copy your database into postgres and run some tests.

SarahRDBingo commented 2 years ago

That is fantastic news. Send us a message when we need to restart docker. It would be great if we could start running it next week.

-Sarah

On Thu, Apr 14, 2022, 6:22 AM Brian Schlining @.***> wrote:

@SarahRDBingo https://github.com/SarahRDBingo I think I've got the M3/VARS stack running against postgres now. As time permits, I'll copy your database into postgres and run some tests.

— Reply to this email directly, view it on GitHub https://github.com/mbari-media-management/vars-annotation/issues/129#issuecomment-1099367570, or unsubscribe https://github.com/notifications/unsubscribe-auth/AMBVHHAB74TIOEEG6N2SA3DVFBA4RANCNFSM5PYMJ7KQ . You are receiving this because you were mentioned.Message ID: @.***>

hohonuuli commented 2 years ago

It would be great if we could start running it next week.

I'll see what I can do. It makes me nervous as I haven't done extensive testing. There could be speed bumps!

hohonuuli commented 2 years ago

@SarahRDBingo Support of Postgres@DARC is going into the develop branch of DARC-UHM/m3-quickstart

SarahRDBingo commented 2 years ago

@hohonuuli after some use, the issue of the concept name changing after adding/editing details to the record still exists, although it is not as apparent/prevalent as it used to be. We have also changed our SOP to only register videos with 2-hour runtime intervals or less. Maybe the behaviour is related to the number of records associated with a given video sequence?

MeaganPutts commented 2 years ago

@hohonuuli The problem with records reverting to nearby animal concept names appears to be much more prevalent a malicious that we previously thought. I just finished annotating a dive. Throughout the annotation process I was constantly fighting to change the animal name of a record back to what I intended it to be, which was incredible frustrating and after completing the dive did a quick look through of my records and was easily able to identify over 20 occurrences of and animal concept name change based on associations that didn't make sense for that animal name. As I look more, I keep finding more occurances and as I try to fix the records the reversions keep happening.

We are all very concerned that we will not be able to catch all the undesired reversions and that there is significant error has been introduced into the datasets that we are producing. Therefore, I believe that this issue should be moved to top priority to resolve as soon as possible.

Thanks for doing your best to help with this.

hohonuuli commented 2 years ago

Therefore, I believe that this issue should be moved to top priority to resolve as soon as possible.

@MeaganPutts OK.As a first look, can you zip up the log files in $HOME/.vars/logs and send them to me? That might give me some pointers to the problem.

hohonuuli commented 2 years ago

@MeaganPutts Also, which version of VARS are you running?

MeaganPutts commented 2 years ago

I last updated VARS April 6th. I see that there is a newer version available, so I will download that and let you know how it goes with this issue using the update.

logs_06022022.zip

hohonuuli commented 2 years ago

I don't see this issue in the logs at all. Is this occurring on all your workstations? Can you go to Apple > About this Mac and post the os version, model year and memory here. (no serial number please)

hohonuuli commented 2 years ago

Also, I added a new VARS release that turns the amount of logged info way down. On your really ancient machines that might make a difference. It's at https://github.com/mbari-media-management/vars-annotation/releases/tag/1.2.2

hohonuuli commented 2 years ago

@MeaganPutts After typing the new name are you hitting [enter]? (Just to clarify that you should be ... )

SarahRDBingo commented 2 years ago

@hohonuuli The issue occurs on all our computers, including my new laptop running 16gb memory and OS Monterey version 12.2.1. The desired concept name is registered in the record after hitting [enter]. The problem occurs after the name is entered, the concept name changes to something else as details are added or edited on the record. Often the concept name becomes a repeat of the most recent record, or a previous name. The error can be reversed by clicking the back button, which leads me to suspect that the name change is not an issue of the right name not being saved correctly. Where do you want me to put the source code of version 1.2.2?

hohonuuli commented 2 years ago

@SarahRDBingo OK, that helps me narrow down possibilities. Does this occur when there are only a few annotations on a video, or only when there are lots of annotations? Can you point me at a video that you've seen this issue on?

hohonuuli commented 2 years ago

We may have to schedule a screen sharing session next week as I can't run VARS against your setup due to UofH's firewall.

SarahRDBingo commented 2 years ago

@hohonuuli I think that's a great idea. What is your schedule like on Monday or Tuesday. Also, there was no .dmg package in the 1.2.2 release page. Should I just copy the contents of the source code zip over to wherever the app lives in our directory?

hohonuuli commented 2 years ago

@SarahRDBingo Oops. Give me a minute to add the DMG

hohonuuli commented 2 years ago

@SarahRDBingo OK DMG is now included in the release.

hohonuuli commented 2 years ago

@SarahRDBingo Monday is pretty open. So anytime (9-5 pacific) works for me.

SarahRDBingo commented 2 years ago

Can we do Tuesday morning instead? Meagan has a function to attend on Monday and I want her to be present.

hohonuuli commented 2 years ago

I have meetings from 9-10AM Pacific and 3:15-4:15PM Pacific on Tuesday. I'm free otherwise. Let me know a time that works for you and Meagan.

SarahRDBingo commented 2 years ago

Hi Brian, Can we try for 11am PST (8AM HST) tomorrow morning?

hohonuuli commented 2 years ago

Log output from vars-annotation during interactive session when user created object, renamed it to Bathypathes sp and then it somehow changed to Neomorphaster forcipatus:

2022-06-08 19:19:20 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     org.mbari.vars.ui.commands.CreateAnnotationFromConceptCmd@177a71e2
2022-06-08 19:19:20 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: DO - Create Annotation using object
2022-06-08 19:19:20 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.AppController                     AnnotationsAddedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='object', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}]}
2022-06-08 19:19:20 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='object', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}]}
2022-06-08 19:19:20 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[]}
2022-06-08 19:19:20 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='object', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}]}
2022-06-08 19:19:21 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = B
2022-06-08 19:19:21 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = A
2022-06-08 19:19:21 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = T
2022-06-08 19:19:21 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = H
2022-06-08 19:19:23 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = Y
2022-06-08 19:19:23 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = P
2022-06-08 19:19:23 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = A
2022-06-08 19:19:23 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = T
2022-06-08 19:19:23 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = H
2022-06-08 19:19:24 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = E
2022-06-08 19:19:24 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = R
2022-06-08 19:19:24 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = BACK_SPACE
2022-06-08 19:19:24 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = S
2022-06-08 19:19:25 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = S
2022-06-08 19:19:26 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = P
2022-06-08 19:19:27 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     UpdateAnnotationCmd{oldAnnotation=Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='object', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}, newAnnotation=Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}}
2022-06-08 19:19:27 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: DO - Update annotation
2022-06-08 19:19:27 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsChangedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}]}
2022-06-08 19:19:27 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=90411b5a-daef-4cfe-7165-ce5afd75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H54M57.898S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:27 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}]}
2022-06-08 19:19:27 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}]}
2022-06-08 19:19:27 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=0, numOfImages=0}]}
2022-06-08 19:19:29 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     org.mbari.vars.ui.commands.CreateAssociationsCmd@23763c37
2022-06-08 19:19:29 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: DO - Add Association: s1 | bed | nil
2022-06-08 19:19:29 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsChangedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=1, numOfImages=0}]}
2022-06-08 19:19:29 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=90411b5a-daef-4cfe-7165-ce5afd75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H54M57.898S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:29 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=1, numOfImages=0}]}
2022-06-08 19:19:29 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=1, numOfImages=0}]}
2022-06-08 19:19:29 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=1, numOfImages=0}]}
2022-06-08 19:19:31 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     org.mbari.vars.ui.commands.CreateAssociationsCmd@3cfbef44
2022-06-08 19:19:31 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: DO - Add Association: s2 | sed | nil
2022-06-08 19:19:31 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsChangedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=2, numOfImages=0}]}
2022-06-08 19:19:31 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=90411b5a-daef-4cfe-7165-ce5afd75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H54M57.898S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:31 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=2, numOfImages=0}]}
2022-06-08 19:19:31 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=2, numOfImages=0}]}
2022-06-08 19:19:31 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=2, numOfImages=0}]}
2022-06-08 19:19:32 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     org.mbari.vars.ui.commands.CreateAssociationsCmd@6ab9a490
2022-06-08 19:19:32 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: DO - Add Association: size | 10-30 cm | nil
2022-06-08 19:19:32 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsChangedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=3, numOfImages=0}]}
2022-06-08 19:19:32 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=90411b5a-daef-4cfe-7165-ce5afd75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H54M57.898S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:32 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=3, numOfImages=0}]}
2022-06-08 19:19:32 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=3, numOfImages=0}]}
2022-06-08 19:19:32 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=3, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = ENTER
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.javafx.buttons.UponBC             Select upon substrate of bed
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     org.mbari.vars.ui.commands.CreateAssociationsCmd@17a5a66a
2022-06-08 19:19:35 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: DO - Add Association: upon | bed | nil
2022-06-08 19:19:35 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsChangedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=90411b5a-daef-4cfe-7165-ce5afd75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H54M57.898S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     UpdateAnnotationCmd{oldAnnotation=Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}, newAnnotation=Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}}
2022-06-08 19:19:35 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: DO - Update annotation
2022-06-08 19:19:35 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsChangedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=90411b5a-daef-4cfe-7165-ce5afd75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H54M57.898S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:19:35 [JavaFX Application Thread       ] DEBUG o.m.v.ui.javafx.shared.FilteredComboBoxDecorator    Handling KeyCode = ENTER
2022-06-08 19:22:11 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     org.mbari.vars.ui.messages.UndoMsg@7599e2e
2022-06-08 19:22:11 [org.mbari.vars.ui.commands.CommandManager] DEBUG org.mbari.vars.ui.commands.CommandManager           Executing Command: UNDO - Update annotation
2022-06-08 19:22:11 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsChangedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:22:11 [OkHttp [http://hurlstor.soest.hawaii.edu:8082/.](http://hurlstor.soest.hawaii.edu:8082/)..] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=90411b5a-daef-4cfe-7165-ce5afd75ce1e, concept='Neomorphaster forcipatus', elapsedTime=PT1H54M57.898S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:22:11 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=null, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:22:11 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
2022-06-08 19:22:11 [JavaFX Application Thread       ] DEBUG org.mbari.vars.ui.AppController                     AnnotationsSelectedEvent{source=org.mbari.vars.ui.javafx.annotable.AnnotationTableController@7dfa6a82, refs=[Annotation{observationUuid=1d9e230f-46e1-4a60-976b-d55efe75ce1e, concept='Bathypathes sp', elapsedTime=PT1H55M26.041S, numOfAssociations=4, numOfImages=0}]}
hohonuuli commented 2 years ago

Another possible cause:

SarahRDBingo commented 2 years ago

I was wondering if the concept name change problem is related to the Issue #128 jumpy scroll/selection issue with JavaFX. Previously Meagan mentioned that the name change occurs mostly in tandem with a scroll hop. I've also noticed recently that as I edit a record, sometimes the scroll/selection jump will cause me to make edits to the most recent record as well as the immediately preceding one. I'm wondering if the inconsistent row heights is exacerbating things as well. Could we try maybe forcing a specific row height to see if things change at all? I understand some of the details would be hidden/cut off, but they would still be visible in the editing pane.

hohonuuli commented 2 years ago

It might be related to #128. I can't duplicate the issue on my test setup yet, so I can't confirm. I'm waiting on this pull request to be integrated into JavaFX to see if it addresses the jumping issue.

hohonuuli commented 1 year ago

The only place an update to an annotation concept name is triggered is when the concept editor concept box receives an enter keystroke. This bug appears to manifest when they are adding associations via a dialog. It's very sporadic. I have not triggered it myself but I've watched it (via screen share) being triggered. Do they hold down the enter key for a long moment?

MeaganPutts commented 1 year ago

Interesting... I don't think it has anything to do with holding the key down for extended periods of time. For myself, I can say that there should be no difference in my physical execution of the enter key when the bug appears...

SarahRDBingo commented 1 year ago

I wouldn't say the enter key is held for along time, nor is the keyboard sticky. The problem can also occasionally arise when editing a field within the editor concept box. The bug is triggered less when using the custom preset buttons, but it still can happen on a rare occasion.

hohonuuli commented 1 year ago

From @MeaganPutts re: vars-annotation 1.4.0-rc5

This still remains an issue and is worse today than when I was annotating last week.

hohonuuli commented 1 year ago

Need feedback on this in for release 1.5.0 🤞

MeaganPutts commented 1 year ago

Just downloaded it and will let you know how it goes 👍 One thing right off the bat (but not a big deal at all) the scroll in the annotation list window is a bit spicy. It takes off when I hover scroll. If there is a way to mellow that out, that would be useful.

hohonuuli commented 1 year ago

From @SarahRDBingo re 1.5.0

The concept name change bug seems to be less apparent as well. I'm not sure if that bug was fully fixed with the new listview functions, but I have my fingers crossed.

hohonuuli commented 1 year ago

@MeaganPutts Reported that this may be resolved now in (Finally) #156