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mbaughn / rna-star

Automatically exported from code.google.com/p/rna-star
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STAR freezes #11

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
What steps will reproduce the problem?
1. running STAR allignment (stranded paired-end)
2.
3.

What is the expected output? What do you see instead?
The allignment files are generated and have some content but the program is 
stuck after printing: 
Nov 19 17:18:30 ..... Started STAR run
Nov 19 17:18:36 ..... Started mapping

What version of the product are you using? On what operating system?
STAR_2.3.0e.Linux_x86_64
Running on Linux CentOS 6.4 Kernl Linux 2.6.32-358.0.1.el6.x86_64 GNOME 2.2.8.2

Please provide any additional information below.
The command is:
/rdata/ngseq/Playground/guy/STAR/STAR_2.3.0e.Linux_x86_64/STAR --genomeDir 
/rdata/ngseq/Playground/guy/STAR/Genome --readFilesIn 
/rdata/ngseq/original_data/rna/illumina/2013-05-05_Guy/GW1/fastq/R1.fastq 
/rdata/ngseq/original_data/rna/illumina/2013-05-05_Guy/GW1/fastq/R2.fastq 
--runThreadN 8

Thanks,
Guy

Original issue reported on code.google.com by wac...@gmail.com on 19 Nov 2013 at 11:04

GoogleCodeExporter commented 8 years ago 
OK it works, just took over 2.5 hours, sorry for that and thanks for the great 
tool which I'm trying now but it seems  cool; it is appreciated as well as your 
replies.

Guy

Original comment by wac...@gmail.com on 20 Nov 2013 at 1:30