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mbbio / SproutAngio

A tool for quantitative analysis of sprouting angiogenesis and lumen space
MIT License
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Creating a filled polygon to draw a central bead - this step works well for 2D images but not 3D images #3

Open ahsusohail opened 1 month ago

ahsusohail commented 1 month ago

Creating a filled polygon to draw a central bead - this step works well for 2D images but not 3D images for vessel analysis

Can you help me understand how to alter this step so it works well for 3D images?

mbbio commented 1 month ago

Hi, for drawing a central bead, it creates a 2D projection of the 3D image. Our defined functions are written for that. If you want 3D volumetric analysis, you can continue up to the Volumetric Analysis at the end. There, it uses the 2D sprouts that it found previously, as 3D mask for the volumetric analysis. If something is not clear, you can share some screenshots here or send me a sample image, I can understand you more to help.