There may be a concern for the steps followed after Chimera decetion. The steps outligned in the script used may actually have been for another process involved in a Qiime2 process called "Training feature classifiers with q2-feature-classifier" which is important for the assigning taxonomy. This could have led to elucidating wrong results from the dataset and hence wrong inferances. Further research would be required to determine the correct steps to follow.
There may be a concern for the steps followed after Chimera decetion. The steps outligned in the script used may actually have been for another process involved in a Qiime2 process called "Training feature classifiers with q2-feature-classifier" which is important for the assigning taxonomy. This could have led to elucidating wrong results from the dataset and hence wrong inferances. Further research would be required to determine the correct steps to follow.