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mbbu / HPC_ToDo

Things that Need to be done on the HPC.
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Data Carpentries - Genomics 2019-12-10; Software Installations & Setup #12

Closed ousodaniel closed 4 years ago

ousodaniel commented 4 years ago

Hi @kipkurui, @espirado

Kindly we will need these Software available for 23 training participants for the workshop, can this be set up by when, please?

The data is also available here

Thanks

kipkurui commented 4 years ago
Software Version Manual Available for Description
FastQC 0.11.7 Link Linux, MacOS, Windows Quality control tool for high throughput sequence data.
Trimmomatic 0.38 Link Linux, MacOS, Windows A flexible read trimming tool for Illumina NGS data.
BWA 0.7.17 Link Linux, MacOS Mapping DNA sequences against reference genome.
SAMtools 1.9 Link Linux, MacOS Utilities for manipulating alignments in the SAM format.
BCFtools 1.8 Link Linux, MacOS Utilities for variant calling and manipulating VCFs and BCFs.
IGV Link Link Linux, MacOS, Windows Visualization and interactive exploration of large genomics datasets.