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mbhall88 / drprg

Drug Resistance Prediction with Reference Graphs
https://mbh.sh/drprg/
MIT License
19 stars 1 forks source link

Update pandora and make_prg #20

Closed mbhall88 closed 1 year ago

mbhall88 commented 1 year ago 
    Could you rerun drprg using the most recent make_prg (0.4.0) and pandora (0.10.0-alpha.0) versions to check if results improve in any way?

Originally posted by @leoisl in https://github.com/mbhall88/drprg/issues/19#issuecomment-1339830010

mbhall88 commented 1 year ago

No difference in results when updating pandora. Testing make prg now...

mbhall88 commented 1 year ago

Diff when updating make_prg to v0.4.0

Tool Drug ΔFN ΔFP
drprg Amikacin 0 0
drprg Capreomycin 0 0
drprg Delamanid 0 0
drprg Ethambutol 0 0
drprg Ethionamide 0 0
drprg Isoniazid 0 0
drprg Kanamycin 0 0
drprg Levofloxacin 0 0
drprg Linezolid 0 0
drprg Moxifloxacin 0 0
drprg Ofloxacin 0 0
drprg Pyrazinamide -1 0
drprg Rifampicin 0 0
drprg Streptomycin 3 -1

These 3 new FNs are caused by https://github.com/iqbal-lab-org/make_prg/issues/55