Paired-end fastq files

[erinyoung]

My apologies if this is in the documentation somewhere, but I am unable to figure out how to run drprg on two fastq files at the same time.

drprg predict -x mtb -i reads.fq --illumina -o outdir/

^ only has one fastq file.

[mbhall88]

Hi. Yep this is mentioned in the docs here https://mbh.sh/drprg/guide/predict.html#input-reads