mbhall88 / head_to_head_pipeline

Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.
GNU General Public License v3.0
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Normalise pandora map VCFs #47

Closed mbhall88 closed 3 years ago

mbhall88 commented 4 years ago

Here we want to make the VCFs output from #46 interoperable with the compass and bcftools VCFs that are based on H37Rv. The main task here really is just adjusting the POS column to the corresponding position on H37Rv - ensuring information about the local PRG name and coordinates are retained in the INFO field.