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mbhall88 / masters_project

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Species Typing cannot find system Renviron #29

Closed mbhall88 closed 7 years ago

mbhall88 commented 7 years ago

This error came up when I was debugging the code for the real-time analysis. It came from the stdout of jsa.np.rtSpeciesTyping.

The solution was that within my .bashrc file I had to move the lines that set the PATH and R_HOME variables to the top lines.

The top lines of the .bashrc file now read:

# add japsa to PATH
export PATH=$PATH:/home/ubuntu/.usr/local/bin
# set R_HOME global
export R_HOME=/usr/lib/R