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mbhall88 / pandora_simulations

Pipeline for the simulations to evaluate de novo variant discovery in pandora
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Create rule to simulate reads #6

Closed mbhall88 closed 5 years ago

mbhall88 commented 5 years ago

Reads need to be simulated from the joined random paths with and without perfect reads.

Simulate reads using https://github.com/karel-brinda/NanoSim-H

mbhall88 commented 5 years ago

Create snakemake wrapper for nanosim-h

https://bitbucket.org/snakemake/snakemake-wrappers/pull-requests/70/add-nanosim-h-wrapper