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mbhall88 / tbpore

Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
MIT License
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Check md5sum or sha256 of decontamination DB index to ensure we have the correct index #27

Closed leoisl closed 2 years ago

leoisl commented 2 years ago

Just noticed this when making PR https://github.com/mbhall88/tbpore/pull/26 . This will impact a little bit runtime, as the DB index is 9GB, but I think is worth it to make sure we are using the correct index...

iqbal-lab commented 2 years ago

surely dont need to do it every time you run. once on download enough?

iqbal-lab commented 2 years ago

we don't sha all our fastq and PRGs every time we run pandora?

leoisl commented 2 years ago

Yeah, was just being fancy :( . Will add the sha-256 sums to the FTP so that they can ensure they have downloaded the index fine