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mbnebel / DeconfoundedFMRI

DRTMLE to address sampling biases in neuroimaging
MIT License
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Are all scripts used for analyses in the manuscript up-to-date? #14

Closed mbnebel closed 2 years ago

mbnebel commented 2 years ago

ask @benjaminrisk to update his code contributions

mbnebel commented 2 years ago

need to add:

  1. FisherTestsRaceAndSex.R
  2. QC_Impacts_Analysis_RtoR_comparetosimulateddata.R 6f10498de89d5a0d86cd17375e469fe579b6b999
  3. QC_Impacts_Analysis_singleseed_noimpute_cb.R
mbnebel commented 2 years ago

need to update:

  1. QC_Impacts_Plots_PropensitiesOutcome.R - use #' before lines you want to print as normal text in .html
  2. QC_Impacts_DRTMLE_Table_CirclePlotsWhiteBG.Rmd - use knitr::spin to run QC_Impacts_Plots_PropensitiesOutcome.R
mbnebel commented 2 years ago

9ee2cc1d9a5527eae6b8cf404cb0ac1c8c5f0edb : @BenjaminRisk edited QC_Impacts_Analysis_singleseed_cb.R to remove motor overflow imputation.

ReviewerResponse/QC_Impacts_Analysis_singleseed_noimpute_cb.R is now obsolete

mbnebel commented 2 years ago

34dd4b6b534e4e4936070ec0ae99dbdbb7c604e4: created Run_DRTMLE_ToyAndApplication_Analyses.Rmd to run analyses in sections 2.3.2 and 2.3.3 of the manuscript