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mbnebel / DeconfoundedFMRI

DRTMLE to address sampling biases in neuroimaging
MIT License
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verify covariate_figures.Rmd #5

Closed mbnebel closed 2 years ago

mbnebel commented 2 years ago
  1. Create Data/noImputation subdirectory.
    1. Edit exclude file to exclude Data subdirectory and all of its contents.
    2. Save .RData input to Data/noImputation
    3. See if .Rmd will knit
lidstone commented 2 years ago

There are no errors in the code except for one section (chunk 8, line 171) where a ‘nScans.RData’ file is loaded.

mbnebel commented 2 years ago

Thanks for catching this! That file tracks how many resting-state scans each participant completed; I'll share it.

lidstone commented 2 years ago

Exploring.covariates.rs-fMRI.usability.and.functional.connectivity.pdf

lidstone commented 2 years ago

Exploring covariates, rs-fMRI usability, and functional connectivity.pdf

mbnebel commented 2 years ago

Thanks @lidstone! I should have clarified that I need you to check the revision branch

lidstone commented 2 years ago

Thank you @mbnebel, the following is from the revision branch. There was one .Rmd file that was giving me some problems (‘FisherTestsRaceAndSex.Rmd’). Under the 'Data/' directory I had to create a subdirectory '/imputeMotorOverflow' and added in the imputed data from the Dropbox folder titled ‘DataWithPropensities_seed1_motoroverflowimpute.RData ’. I then changed the filename to 'DataWithPropensities_seed1.RData' and the code ran without error.

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Exploring covariates, rs-fMRI usability, and functional connectivity.pdf