mboquien
commented
9 months ago This is curious. Unclear what the problem might be. However, I see your python version is not supported anymore. Can you check if the error still occurs with a more recent python?
I'm not sure why, but I keep getting this error:
IndexError: index -501 is out of bounds for axis 0 with size 500I'm using 128 cores, 128 chunks.
Here's the full traceback:
`╭───────────────────── Traceback (most recent call last) ─────────────────────╮
│ /home/user/.local/bin/pcigale:11 in │
│ │
│ 8 if name == 'main': │
│ 9 │ sys.argv[0] = re.sub(r'(-script.pyw?|.exe)?$', '', sys.argv[0]) │
│ 10 │ sys.exit( │
│ ❱ 11 │ │ load_entry_point('pcigale==2022.1', 'console_scripts', 'pcigale │
│ 12 │ ) │
│ 13 │
│ │
│ /home/user/.local/lib/python3.6/site-packages/pcigale/init.py:139 in │
│ main │
│ │
│ 136 │ │ elif args.parser == "check": │
│ 137 │ │ │ check(config) │
│ 138 │ │ elif args.parser == "run": │
│ ❱ 139 │ │ │ run(config) │
│ 140 │
│ │
│ /home/user/.local/lib/python3.6/site-packages/pcigale/init.py:71 in │
│ run │
│ │
│ 68 │ │ console.print(f"{INFO} Start: {start.isoformat('/', 'seconds') │
│ 69 │ │ start = time.monotonic() # Simpler time for run duration │
│ 70 │ │ │
│ ❱ 71 │ │ analysis_module.process(configuration) │
│ 72 │ │ │
│ 73 │ │ end = dt.datetime.now() │
│ 74 │ │ console.print(f"{INFO} End: {end.isoformat('/', 'seconds')}") │
│ │
│ /home/user/.local/lib/python3.6/site-packages/pcigale/analysis_modules/p │
│ df_analysis/init.py:235 in process │
│ │
│ 232 │ │ obs = ObservationsManager(conf, params) │
│ 233 │ │ obs.save("observations") │
│ 234 │ │ │
│ ❱ 235 │ │ results = self._compute(conf, obs, params) │
│ 236 │ │ console.print(f"{INFO} Sanity check of the analysis results.") │
│ 237 │ │ results.best.analyse_chi2() │
│ 238 │
│ │
│ /home/user/.local/lib/python3.6/site-packages/pcigale/analysis_modules/p │
│ df_analysis/init.py:182 in _compute │
│ │
│ 179 │ │ │ # avoid recomputing the models when we do a mock analysis │
│ 180 │ │ │ if not hasattr(self, "_models"): │
│ 181 │ │ │ │ console.print(f"{INFO} Computing models.") │
│ ❱ 182 │ │ │ │ models = self._compute_models(conf, obs, params, ibloc │
│ 183 │ │ │ │ if nblocks == 1: │
│ 184 │ │ │ │ │ self._models = models │
│ 185 │ │ │ else: │
│ │
│ /home/user/.local/lib/python3.6/site-packages/pcigale/analysis_modules/p │
│ df_analysis/init.py:113 in _compute_models │
│ │
│ 110 │ │ │ params.blocks[iblock], │
│ 111 │ │ │ initargs, │
│ 112 │ │ │ init_worker_sed, │
│ ❱ 113 │ │ │ conf["cores"] │
│ 114 │ │ ) │
│ 115 │ │ │
│ 116 │ │ # Print the final value as it may not otherwise be printed │
│ │
│ /home/user/.local/lib/python3.6/site-packages/pcigale/analysis_modules/p │
│ df_analysis/init.py:168 in _parallel_job │
│ │
│ 165 │ │ │ with mp.Pool( │
│ 166 │ │ │ │ processes=ncores, initializer=initializer, initargs=in │
│ 167 │ │ │ ) as pool: │
│ ❱ 168 │ │ │ │ pool.starmap(worker, enumerate(items), chunksize) │
│ 169 │ │ │ │
│ 170 │ │ │ # After the parallel processes have exited, it can be rest │
│ 171 │ │ │ counter.progress = progress │
│ │
│ /usr/lib64/python3.6/multiprocessing/pool.py:274 in starmap │
│ │
│ 271 │ │ be iterables as well and will be unpacked as arguments. Hence │
│ 272 │ │
funcand (a, b) becomes func(a, b). │ │ 273 │ │ ''' │ │ ❱ 274 │ │ return self._map_async(func, iterable, starmapstar, chunksize) │ │ 275 │ │ │ 276 │ def starmap_async(self, func, iterable, chunksize=None, callback=N │ │ 277 │ │ │ error_callback=None): │ │ │ │ /usr/lib64/python3.6/multiprocessing/pool.py:644 in get │ │ │ │ 641 │ │ if self._success: │ │ 642 │ │ │ return self._value │ │ 643 │ │ else: │ │ ❱ 644 │ │ │ raise self._value │ │ 645 │ │ │ 646 │ def _set(self, i, obj): │ │ 647 │ │ self._success, self._value = obj │ ╰──────────────────────────────────────────────────────────────────────────────╯ IndexError: index -501 is out of bounds for axis 0 with size 500`