search

mbreese / swalign

Smith-Waterman local aligner
Other
67 stars 22 forks source link

Cigar #3

Closed JasonR055 closed 10 years ago

JasonR055 commented 10 years ago

Hi again,

Another bug. This time with the cigar. According to the samtools spec, it should be 10M1D45M in this instance.

Query: rd1 (55 nt)
Ref  : ref (56 nt)

Query:  1 GTGATTAGTA-TTTGTATTGTTGGGGTTGTTTTAGGGAGAAGATTTTTTTNTTT 53
          |||||||||| ||||||||||||||||.||||||||||||||||||||||.|||
Ref  :  1 GTGATTAGTATTTTGTATTGTTGGGGTYGTTTTAGGGAGAAGATTTTTTTTTTT 54

Score: 88
Matches: 51 (94.4%)
Mismatches: 3
CIGAR: 10M1D43M
JasonR055 commented 10 years ago

Sorry, I was incorrect here.