Open armish opened 5 years ago
Hi Amish, Sorry for the late reply, I just saw this. I would like to point out that the virCodes/virfindercommands.txt is not a script, it was just a text file i kept to define basic steps in the script I wrote, and that option has not been included in the final script. Additionally thank you for noticing and informing coders of such errors, it is a great service to the bioinformatic community.
Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's
-max_target_seqs
parameter:Based on the recently published report, Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows, there is a strong chance that this parameter is misused in your repository.
If the use of this parameter was intentional, please feel free to ignore and close this issue but I would highly recommend to add a comment to your source code to notify others about this use case. If this is a duplicate issue, please accept my apologies for the redundancy as this simple automation is not smart enough to identify such issues.
Thank you! -- Arman (armish/blast-patrol)