mc2-center / data-models

Versioned history of the MC2 Center data model
https://mc2-center.github.io/data-models/
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10X Visium model integration #135

Closed Bankso closed 2 months ago

Bankso commented 3 months ago

Fixes #134

Changelog

A separate branch and PR will be used to add the documentation updates at a later date.

Google sheet links to models: 10X Visium RNA Spatial Profiling Level 1 10X Visium RNA Spatial Profiling Level 2 10X Visium RNA Spatial Profiling Level 3 10X Visium RNA Spatial Profiling Level 4 10X Visium Spatial Profiling Auxiliary Files

Bankso commented 3 months ago

@Bankso is the empty column at the end expected for all these files?

That's a good question - which files do you mean?

The final columns for the annotationProperty and valid value CSVs are Validation Rules and nonpreferred_values, respectively. In a lot of situations, we don't end up having values in those columns.

For the google sheet templates, I think the empty right-hand columns are ignored when the CSV gets downloaded

aditigopalan commented 2 months ago

@Bankso is the empty column at the end expected for all these files?

That's a good question - which files do you mean?

The final columns for the annotationProperty and valid value CSVs are Validation Rules and nonpreferred_values, respectively. In a lot of situations, we don't end up having values in those columns.

For the google sheet templates, I think the empty right-hand columns are ignored when the CSV gets downloaded

Ah that clarifies it, makes sense!