Following intake meetings or other situations where contributors provide plans for data to be uploaded to Synapse, it would be helpful to have a programmatic way to create the assay-specific folders. For example, if someone says they want to upload GeoMX spatial transcription data, I would like to have a script where I type something like:
python assay_folders.py -dt geomx
To create all the required folders
Additional helpful features:
allow folders for multiple data types to be created at once
check to see if required folders exist, prior to creating
automatically trigger folder creation when a data sharing plan is uploaded/updated
Relative to issue https://github.com/mc2-center/mc2-center-dcc/issues/54
Following intake meetings or other situations where contributors provide plans for data to be uploaded to Synapse, it would be helpful to have a programmatic way to create the assay-specific folders. For example, if someone says they want to upload GeoMX spatial transcription data, I would like to have a script where I type something like:
python assay_folders.py -dt geomxTo create all the required foldersAdditional helpful features: