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mc2-center / nf-histoqc

A Nextflow wrapper for HistoQC
MIT License
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Refine mask output and publishDir strategy #32

Closed adamjtaylor closed 6 months ago

adamjtaylor commented 6 months ago

My hacky route to mv png masks out of the out/$images dirs to get them into the masks output channel and the publishDir caused a IO error when using fusion.

This refines the strategy to use a pattern to recurse into the directories to output the masks..