Open sophiahirakis opened 5 years ago
Hi team,
There is an issue producing plot output when jobs are running on a server.
The plotting module requests a start_time.txt file
See error below:
data_layout = {'version': 2, 'data_layout': [['/DIR', ['output_data']], ['/FILE_TYPE', ['react_data', 'viz_data']], ['/SEED', [1]]]} num_runs = 1, data_layout = {'version': 2, 'data_layout': [['/DIR', ['output_data'], 0], ['/FILE_TYPE', ['react_data', 'viz_data'], 0], ['/SEED', [1], 0]]} Preparing run 0 Counters = /SEED:0 /FILE_TYPE:0 /DIR:0 Run path = output_data/react_data Parameter Point for run is: glob of /home/shirakis/projects/Dyad/sims/sim_files/D_b_p_f_R_S_L-6-n_files/mcell/output_data/reactdata/seed*/Ca2_cyt.World.dat Traceback (most recent call last): File "/nadata/snl/lv_home/cnl/shirakis/bin/blender_2.79/2.79/scripts/addons/cellblender/cellblender_reaction_output.py", line 404, in execute start_time = os.stat(os.path.join(project_files_path(), "start_time.txt")).st_mtime FileNotFoundError: [Errno 2] No such file or directory: '/home/shirakis/projects/Dyad/sims/sim_files/D_b_p_f_R_S_L-6-n_files/start_time.txt'
location: :-1
Hi team,
There is an issue producing plot output when jobs are running on a server.
The plotting module requests a start_time.txt file
See error below:
data_layout = {'version': 2, 'data_layout': [['/DIR', ['output_data']], ['/FILE_TYPE', ['react_data', 'viz_data']], ['/SEED', [1]]]} num_runs = 1, data_layout = {'version': 2, 'data_layout': [['/DIR', ['output_data'], 0], ['/FILE_TYPE', ['react_data', 'viz_data'], 0], ['/SEED', [1], 0]]} Preparing run 0 Counters = /SEED:0 /FILE_TYPE:0 /DIR:0 Run path = output_data/react_data Parameter Point for run is: glob of /home/shirakis/projects/Dyad/sims/sim_files/D_b_p_f_R_S_L-6-n_files/mcell/output_data/reactdata/seed*/Ca2_cyt.World.dat Traceback (most recent call last): File "/nadata/snl/lv_home/cnl/shirakis/bin/blender_2.79/2.79/scripts/addons/cellblender/cellblender_reaction_output.py", line 404, in execute start_time = os.stat(os.path.join(project_files_path(), "start_time.txt")).st_mtime FileNotFoundError: [Errno 2] No such file or directory: '/home/shirakis/projects/Dyad/sims/sim_files/D_b_p_f_R_S_L-6-n_files/start_time.txt'
location::-1
location::-1