Closed FAnderl closed 1 year ago
Thanks for reporting this issue, Florian. I will add a comment to organelle_transport.bngl that states that this file is a compartmental BNGL file and is intended to be imported into CellBlender using: File->Import->Compartmental BioNetGen model (.bngl)
Thank you.
However, I think there is an actual issue here. I receive the same error message when I am trying to import an non-compartmental model like e.g., LG.bngl also from the BNGL tutorial site.
I am tring to import a BNG model (specifically the example model [_organelletransport.bngl] from (https://github.com/RuleWorld/BNGTutorial/blob/master/CBNGL/organelle_transport.bngl ) into CellBlender 2.93.
I am using the import option File->Import->BioNetGen/SBML model (.bngl,.xml) and I receive the error:
Python: Traceback (most recent call last): File "/Applications/Blender-2.93-CellBlender/Blender.app/Contents/Resources/2.93/scripts/addons/cellblender/bng/init.py", line 43, in execute external_operators.filePath=findCellBlenderDirectory()+'bng{0}'.format(os.sep) + self.filepath.split(os.sep)[-1] File "/Applications/Blender-2.93-CellBlender/Blender.app/Contents/Resources/2.93/scripts/addons/cellblender/bng/init.py", line 14, in findCellBlenderDirectory cellblenderDir = [x for x in os.listdir(directory) if 'cellblender' in x] FileNotFoundError: [Errno 2] No such file or directory: '/Applications/Blender-2.93-CellBlender/Blender.app/Contents/Resources/2.93/python/lib/python39.zip'
location::-1
However, the import via the option File->Import->Compartmental BioNetGen model (.bngl) works just fine.