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mcellteam / cellblender

Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models
http://mcell.org/tutorials/index.html
GNU General Public License v2.0
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Simulation runner bug #82

Closed jczech closed 9 years ago

jczech commented 9 years ago

This bug was reported by Annalisa Scimemi. It was triggered when using Blender 2.74, Cellblender 1.0, MCell 3.3, and Python 2.7. It is not entirely clear what is causing the problem, but it seems to be a problem with the new Queue based simulation runner. Here's an example traceback:

Traceback (most recent call last):
  File "/home/user/.config/blender/2.74/scripts/addons/cellblender/run_wrapper.py", line 20, in <module>
    proc = sp.Popen(cmd.split(), cwd=wd, bufsize=1, shell=False, stdout=sp.PIPE, stderr=sp.PIPE)
  File "/usr/lib/python2.7/subprocess.py", line 710, in __init__
    errread, errwrite)
  File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child
    raise child_exception
OSError: [Errno 2] No such file or directory
Task PID 26229 status: mcell_error return code: 1
Select Called without try/except with pin state:False, and old pin state = False
tmbartol commented 9 years ago

Issue fixed in commit c024a6a6b88e6ee7c753ff9650edcd56fcd6aaa3