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mcfrith / tandem-genotypes

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Question about the output #18

Closed kendaida closed 1 year ago

kendaida commented 1 year ago

Hi,

Thank you for developing cool tool! I just started to use tandem-genotypes and have a question about the format of the output. What does "." mean in column 7 and 8? When I use -g option, does the output include the all the regions specified in -g?

Thanks, Ken

mcfrith commented 1 year ago

Thanks for your interest in tandem-genotypes!

"." means there are no reads covering the repeat on that strand.

The -g option doesn't change what output is included. It adds annotations to the output. (But if you use the -s option, then -g does change what is included.)