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mcib3d / TANGO

TANGO software is an open-source software for Analysis of Nuclear Genome Organization.
http://biophysique.mnhn.fr/tango/HomePage
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TANGO broken after mcib3d-core update #7

Closed landowark closed 5 years ago

landowark commented 5 years ago

There's a problem with TANGO recently and I"m thinking that the update to mcib3d-core is the issue. TANGO does not seem to be able to access mcib3d.image3d.processing.BinaryMorpho.binaryDilate anymore which is leading to an error out when running batch.

Specifically the error I'm receiving is:

Nuclei segmentation: 1/1 Exception in thread "Thread-6" java.lang.NoSuchMethodError: mcib3d.image3d.processing.BinaryMorpho.binaryDilate(Lmcib3d/image3d/ImageInt;FFI)Lmcib3d/image3d/ImageByte; at tango.plugin.filter.BinaryDilate.runPostFilter(BinaryDilate.java:82) at tango.plugin.filter.MorphoMathFilters.runPostFilter(MorphoMathFilters.java:75) at tango.plugin.filter.PostFilterSequence.run(PostFilterSequence.java:71) at tango.dataStructure.Field.postFilterStructure(Field.java:342) at tango.dataStructure.Field.processNucleus(Field.java:280) at tango.gui.FieldManager.processAndCropFields(FieldManager.java:126) at tango.gui.FieldManager.processAndCropFields(FieldManager.java:636) at tango.gui.FieldManager$2.run(FieldManager.java:601) at java.lang.Thread.run(Thread.java:748)

As an aside, the update for v0.98 is still providing the jar for v0.97 which is causing a duplication of commands.

mcib3d commented 5 years ago

Yes, there is a pb with the update of mcib3d, this commit a2e492d5af11ec8daec85596fc6480597c57e91b should fix the pb. The updated version of TANGO is updated on Fiji.

landowark commented 5 years ago

It seems to be working now, thanks.