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mcib3d / mcib3d-plugins

ImageJ plugins for 3D processing and analysis
https://imagej.net/3D_ImageJ_Suite
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hyperstack #5

Closed tischi closed 8 years ago

tischi commented 8 years ago

Hello, I just realized the the plugins do not properly work with hyperstacks (e.g. [File>Open Samples>Mitosis]). I think this would be very important as multi-color time-lapse applications are kind of standard these days.

mcib3d commented 8 years ago

Hi, Yes, thanks to Wayne Rasband, only the ImageJ version of fastfilters is working with 5D images. I did not implement the use for 4D or 5D images because it can be done easily with macros. I will then add some macros for 4D/5D on the website.

tischi commented 8 years ago

..I am curious: what does "ImageJ version" mean? is this different to "Fiji version"?

mcib3d commented 8 years ago

Hi,

Humm same, the 3D filters located in Process/Filters, median3D, ...

tischi commented 8 years ago

Hi, ok...in which sense are those "fast filters"? http://rsb.info.nih.gov/ij/plugins/gaussian-blur-3d/Gaussian_Blur_3D.java doesn't look multi-core to me, or?

mcib3d commented 8 years ago

Hi, Gaussian 3D is the only 3D filter not written by me, so maybe not multi-core ;) . The other 3D filters should be multi-core.

tischi commented 8 years ago

Hi Thomas, ok! I did not know this! But I feel you would recommend using the 3D Suite in general because it is more consistent and up-to-date, isn't it?

mcib3d commented 8 years ago

in the FastFilters3D plugin of the 3D suite, there are more filters available, so yes ;)