Closed twsaari closed 5 years ago
Hi twsaari,
sorry about the delay here; I was moving cross-country. I totally messed up the BedAnnotator when I moved over to the new command line argument system. I've fixed and tested this in 1.9.3. I'm just about to update the documentation as well (some things changed at UCSC, so I've checked-in the sample BED files), but let me know if this fixes things for you.
I'm going to close this for now unless the update doesn't work for you. Thanks again for trying out FlashFry!
Hello,
I'm using FlashFry-assembly-1.9.2, and the bedannotator module seems to be nonfunctional. The only result of using it is the displacement of the last column of data. No annotations are created, and no position transformations occur. I first encountered this using my own dataset, but have since confirmed this to be true following the wiki instructions to the letter:
Here's my commands: