Closed poojachandra closed 3 months ago
Can you try (within your sample output directory):
find . -iname "*.RData"
The snv_results.RData file should be under the sample/ccube_out/snvs
subdirectory. If it isn't there, is the RData file for SVs present? Is the snvs RData file being generated for the example data run with run_example_wsnvs.sh
?
Hi, I am able to generate all the outputs except the 'snv_results.RData' file at the 'svclone cluster' step. The pipeline does not throw any errors and 'ccube' is installed as well.
Is there anything else I might be missing ?
Thank You