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Bootcamp Day 4 grading rubrics
#4
Closed
mfisada
closed
1 month ago
mfisada
commented
1 month ago
[Updated 20240912]
==========
DAY 4 LUNCH
Exercise
Description
Completion
Q1A
Construct dictionary of paired gene-tissue data from gene-tissue file
YES
Q1B
Comments
YES
Q2A
Construct dictionary of tissues and corresponding sample IDs from sample attribute file
YES
Q2B
Comments
YES
Q3A
Retrieve sample IDs from expression data file
YES
Q3B
Comments
YES
Q4A
Subset tissue-associated sample IDs to include only those present in expression data
YES
Q4B
Comments
YES
Q5A
Identified tissue types with the most samples
YES
Q5B
Comments
YES
Q5C
Identified tissue types with the fewest samples
YES
Q5D
Comments
YES
Q6
Detailed comments on Q1-Q5 (see "Comments" components for each question above)
YES
Q7A
Combine tissue names and gene IDs
YES
Q7B
Log-transform expression data with a pseudocount of 1
YES
Q7C
Switch violin plot axes so categories are on y-axis
YES
Q7D
Axis labels
YES
Q7E
Discussion of results
YES
==========
DAY 4 AFTERNOON
Exercise
Description
Completion
Q1.1
Load DNM data
YES
Q1.2
Tabulate paternally and maternally inherited DNMs per proband
YES
Q1.3
Load age data into df
YES
Q1.4
Combine age and DNM data
YES
Q2.1.1
Plot maternal DNMs vs. maternal age
YES
Q2.1.2
Plot paternal DNMs vs. paternal age
YES
Q2.2.0
Fit linear regression model to data
YES
Q2.2.1
Discuss "size" of relationship
YES
Q2.2.2
Discuss significance of relationship
YES
Q2.3.0
Fit linear regression model to data
YES
Q2.3.1
Discuss "size" of relationship
YES
Q2.3.2
Discuss significance of relationship
YES
Q2.4
Predict # of paternal DNMs for proband with 50.5 yr old father at time of birth
YES
Q2.5.1
Histogram of maternal DNMs per proband
YES
Q2.5.2
Histogram of paternal DNMs per proband
YES
Q2.6.0
Test significance between # of maternally vs. paternally inherited DNMs per proband
YES
Q2.6.1
Justification for selection of statistical test
YES
Q2.6.2
Interpretation of test results
YES
[Updated 20240912]
==========
DAY 4 LUNCH
==========
DAY 4 AFTERNOON