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mcsiple / mmrefpoints

A package for simulating marine mammal abundance and calculating reference points.
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errors found in devtools::check() #42

Closed ChristineStawitz-NOAA closed 3 years ago

ChristineStawitz-NOAA commented 3 years ago

devtools::check() found two errors when I ran it locally, one in your "examples" and one in "tests"

1.

 Running examples in 'mmrefpoints-Ex.R' failed
  The error most likely occurred in:

  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: get_dz
  > ### Title: Derivative of z (function to minimize)
  > ### Aliases: get_dz
  > 
  > ### ** Examples
  > 
  > get_dz(z = 2.39, MNPL = 0.5, 
  + lh.params = list(S0 = 0.944, S1plus = 0.99, AgeMat = 17, 
  + lambdaMax = 1.04, K1plus = 9000))
  Error in if (AgeMat > nages) { : argument is of length zero
  Calls: get_dz -> get_mnpl -> npr
  Execution halted

2.

Tests: == Failed tests ================================================================
-- Failure (test-golem-recommended.R:29:5): app launches -----------------------
x$is_alive() is not TRUE

`actual`:   FALSE
`expected`: TRUE
mcsiple commented 3 years ago

That last golem test has always given me problems and I don't know why it fails (the app definitely runs, and on multiple machines!) so I commented out the test containing is.alive(x) for now. Also fixed the get_dz() issue. Now getting an error for get_f() that I can't diagnose-- I've put this new error in issue #48 .