mcveanlab / mccortex

De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
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Reduce peak memory used by `thread` #11

Open noporpoise opened 9 years ago

noporpoise commented 9 years ago

Consider writing links to disk to reduce peak memory.

Writing links to ~256 files, which can then be sorting and merged. Temporary file will look like:

<kmer><junctions><tab><count>

Sorting can be done with unix sort command.