mcveanlab / mccortex

De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
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Generate links info for reference sequence #12

Open noporpoise opened 9 years ago

noporpoise commented 9 years ago

The bubble caller has less power to assemble the reference allele vs sample allele since the reference colour is just a bag of kmers without link information. Reference sequences can provide reasonable link info if we break at repetitive kmers.