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mcveanlab / mccortex

De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
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New command: query #24

Open noporpoise opened 8 years ago

noporpoise commented 8 years ago

Add new command query to query sorted and indexed graphs on disk:

mccortex31 query [-k <kmer>|-1 <kmers.fa>|-o out.ctx] <graph.ctx> <graph.ctx.idx>

Output is either in the same format as view command or in graph format, written to disk.