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mcveanlab / mccortex

De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
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Breakpoint ref filter #41

Closed noporpoise closed 7 years ago

noporpoise commented 7 years ago

Add breakpoint ref filter similar to --haploid <col> filter for the bubble caller, to filter out calls where the non-ref path has ref coverage. Suggest -H,--haploid-ref.

noporpoise commented 7 years ago

This is actually the current behaviour. I've added a new test case to check this.