Closed yeban closed 7 years ago
Yes, sequences are broken up at N bases.
For example, the input AACNNCTA
gives kmers AAC
and CTA
:
$ bin/mccortex31 build -q -k 3 --sample Test --seq <(echo 'AACNNCTA') - | bin/mccortex31 view -q --kmers -
AAC 1 ........
CTA 1 ........
Thanks.
Are k-mers containing N automatically ignored?