Closed mbhall88 closed 6 years ago
The last two arguments were supposed to be optional but were required by a bug. They should now be optional again (git pull
to get fixed version).
cutoff
is the cleaning cutoff used/proposedkcov
is approximate kmer coverage of your sample (see https://github.com/mcveanlab/mccortex/wiki/Kmer-coverage)
In the workflow examples for plotting coverage distribution you give an example of running this plot with
However, when I do this I get an error saying I am missing two parameters
[<cutoff> [<kcov>]]
. What do these mean/do? Would be great if you could add a passage about this in the wiki.