Closed ShawnCone closed 5 years ago
You can try compiling mccortex in a conda environment. Try installing miniconda from here. Then activate the environment and install libz with conda install zlib
.
Sorry I'm not sure how best to install the dependencies without admin. If @winni2k's suggestion doesn't work for you, could you ask your administrator to install the dependencies?
Apologies in advance if this is not the right place to ask this question.
During the build process, it is stated that on linux:
sudo apt install liblzma-dev libbz2-dev
should be done for htslib dependency purposes.However, in our local system, only the admin has the ability to use this command. Is there any alternative to this?
What has been done:
After these, running make all within cloned mccortex folder still results in error. Attached is the stderr/stdout of the make all command.
McCortex Stdout and Stderr.txt
Thank you very much