mcveanlab / mccortex

De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
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Raw & clean length or coverage in one file #81

Open JFsanchezherrero opened 5 years ago

JFsanchezherrero commented 5 years ago

Dear developers, I have just added two simple scripts to generate a Kmer and unitigs coverage plot and unitig length plot using at the same time the raw and clean information provided.

I basically made a function of your code for plotting each individual file and a make a couple of adjustments.

I added two files to the repo and I attach here an example of the plots generated my own data: scripts/R/plot-covg-hist_raw-clean.R scripts/R/plot-length-hist_raw-clean.R

Examples: test-cov.pdf

image

test-len.pdf image

Please, feel free to modify the code, add them if you feel like or discard them if you don't like them and do not find them useful.

I did if because I found them useful in order to check and plot the quality filtering generated during the proccess in a single file.

Regards, Jose F. Sanchez-Herrero

iqbal-lab commented 1 year ago

Apologies @JFsanchezherrero that this PR has been ignored. I don't see any reason not to just merge it.

iqbal-lab commented 1 year ago

ah of course i dont have merge rights for this repo